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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs4808801 1 rs4808136 chr19:18618867 ISYNA1 chr19:18545625-18548943:- -0.12 -4.48 9.37E-6 Breast cancer
THCA cis rs4808801 1 rs4808136 chr19:18618867 LRRC25 chr19:18501955-18508421:- 0.15 4.99 8.67E-7 Breast cancer
THCA cis rs2905426 1 rs4808200 chr19:19554803 HAPLN4 chr19:19366453-19384074:- 0.33 7.12 3.99E-12 Schizophrenia
THCA cis rs2905426 1 rs4808200 chr19:19554803 KIAA0892 chr19:19431630-19469562:+ -0.14 -4.05 5.99E-5 Schizophrenia
THCA cis rs2905426 1 rs4808200 chr19:19554803 TM6SF2 chr19:19375174-19384074:- 0.2 4.18 3.41E-5 Schizophrenia
THCA cis rs4808801 1 rs4808801 chr19:18571141 ELL chr19:18553475-18632937:- -0.26 -6.58 1.23E-10 Breast cancer
THCA cis rs4808801 1 rs4808801 chr19:18571141 ISYNA1 chr19:18545625-18548943:- 0.12 4.55 6.68E-6 Breast cancer
THCA cis rs4808801 1 rs4808801 chr19:18571141 LRRC25 chr19:18501955-18508421:- -0.13 -4.55 6.82E-6 Breast cancer
THCA cis rs4808801 1 rs4808804 chr19:18585325 ELL chr19:18553475-18632937:- -0.25 -6.27 7.97E-10 Breast cancer
THCA cis rs4808801 1 rs4808804 chr19:18585325 ISYNA1 chr19:18545625-18548943:- 0.12 4.65 4.26E-6 Breast cancer
THCA cis rs4808801 1 rs4808804 chr19:18585325 LRRC25 chr19:18501955-18508421:- -0.14 -4.69 3.55E-6 Breast cancer
THCA cis rs4809219 1 rs4809219 chr20:62303115 ZGPAT chr20:62338794-62370459:+ 0.15 4.56 6.45E-6 Atopic dermatitis
THCA cis rs4813003 1 rs4810486 chr20:44766403 CD40 chr20:44746906-44758384:+ -0.18 -3.43 0.00066 Kawasaki disease
THCA cis rs6012564 1 rs4810909 chr20:47621372 ARFGEF2 chr20:47538275-47653229:+ 0.11 3.56 0.000407 Anger
THCA cis rs6012564 1 rs4810909 chr20:47621372 CSE1L chr20:47662838-47713484:+ -0.41 -9.81 8.33E-21 Anger